miRBase entry: bmo-mir-3416

Stem-loop bmo-mir-3416


Accession
MI0014480
Description
Bombyx mori bmo-mir-3416 precursor miRNA


Sequence

62 reads, 16 reads per million, 3 experiments
ggcgagaaacucagugggcuguuuguuuuuucugcggaucgauuuuaugugaggcaccuguuuuuuauugacgcguuuccuuggugcuauugugguucuucuacaugaauUCGAAUGUCGCAGGACGUGCUGGCUggguuaucuugug
.((((((((((((((.(((((((........((((((.((((.(((((((((((.(((.(((.......)))(((((.....)))))......))).)))).))))))).))))...)))))))))).))).)))))))).)))))).

Structure
g      -        g   -    uguuuuuu      --a    u       -    c   uguuuuuuauugac     u 
 gcgaga aacucagu ggc uguu        cugcgg   ucga uuuaugu gagg acc              gcguu c
 |||||| |||||||| ||| ||||        ||||||   |||| ||||||| |||| |||              ||||| c
 uguucu uugggUCG UCG GCAG        GACGCU   AGCU aaguaca cuuc ugg              cgugg u
g      a        G   U    --------      GUA    u       u    u   --------uguuau     u 


Annotation confidence Not enough data
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Genome context
NW_004581793.1: 248032-248179 [+]

Database links

Mature bmo-miR-3416

Accession MIMAT0015623
Description Bombyx mori bmo-miR-3416 mature miRNA
Sequence 111 - UCGAAUGUCGCAGGACGUGCUGGCU - 135
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415