miRBase entry: aly-MIR156e

Stem-loop aly-MIR156e


Accession
MI0014506
Description
Arabidopsis lyrata aly-MIR156e precursor miRNA
Gene family
MIPF0000008; MIR156


Sequence

152 reads, 5300 reads per million, 1 experiments
guagagugugaaagguaagaggaggUGACAGAAGAGAGUGAGCACacauggugguuucuugcaugcuuuuuuuuaauuagggcuucaugcuugaagcuauguguGCUUACUCUCUCUCUGUCACCccuucucucucucuuuucaaauuac
....(((.(((((((..(((((((((((((((((((((((((((((((((((...(((..(((((((((.........)))))...))))..))))))))))))))))))))))).)))))))))...)).))))..))))))).)))..

Structure
guag   g       ua    -  ---         -                    ggu   uu    ---     uuu 
    agu ugaaagg  agag ga   ggUGACAGA AGAGAGUGAGCACacauggu   uuc  gcau   gcuuu   u
    ||| |||||||  |||| ||   ||||||||| ||||||||||||||||||||   |||  ||||   |||||   u
    uua acuuuuc  ucuc cu   CCACUGUCU UCUCUCAUUCGuguguaucg   aag  cgua   cggga   a
--ca   a       uc    u  ucc         C                    ---   uu    cuu     uua 


Annotation confidence Not enough data
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Genome context
GL348718.1: 4871349-4871498 [+]

Database links

Mature aly-miR156e-5p

Accession MIMAT0017405
Description Arabidopsis lyrata aly-miR156e-5p mature miRNA
Sequence 26 - UGACAGAAGAGAGUGAGCAC - 45
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR156e-3p

Accession MIMAT0017406
Description Arabidopsis lyrata aly-miR156e-3p mature miRNA
Sequence 105 - GCUUACUCUCUCUCUGUCACC - 125
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103