Stem-loop aly-MIR156g

Accession

MI0014508

Description

Arabidopsis lyrata aly-MIR156g precursor miRNA

Gene family

MIPF0000008; MIR156

Sequence

5 reads, 174 reads per million, 1 experiments

ggagguaagugaugaauaacaauaaggaaggCGACAGAAGAGAGUGAGCACacauggcuccuuuuucuagcaugcucaugcucgaaagcucugcguGCUUACUCUCUUCUUGUCUCCuccugcuuucucucuuucucu
(((((.(((.((.(((........((((.((.(((((((((((((((((((.((.((((.....(((.(((((....))))).))))))).)).))))))))))))))).)))).))))))...))))).))))))))

Structure

     u   u  u   uaacaaua    a  C    -               a  u    ccuuu   u     g 
ggagg aag ga gaa        agga gg GACA GAAGAGAGUGAGCAC ca ggcu     uuc agcau c
||||| ||| || |||        |||| || |||| ||||||||||||||| || ||||     ||| |||||  
ucucu uuc cu cuu        uccu CC CUGU CUUCUCUCAUUCGug gu ucga     aag ucgua u
     -   u  -   -----ucg    -  U    U               c  c    -----   c     c 

Annotation confidence Not enough data

Genome context

GL348715.1: 21084413-21084550 [+]

Mature aly-miR156g-5p

• Accession: MIMAT0017409
• Description: Arabidopsis lyrata aly-miR156g-5p mature miRNA
• Sequence: 32 - CGACAGAAGAGAGUGAGCAC - 51
• Evidence: experimental ; Illumina [1]

Mature aly-miR156g-3p

• Accession: MIMAT0017410
• Description: Arabidopsis lyrata aly-miR156g-3p mature miRNA
• Sequence: 97 - GCUUACUCUCUUCUUGUCUCC - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089