Stem-loop aly-MIR157c

Accession

MI0014512

Description

Arabidopsis lyrata aly-MIR157c precursor miRNA

Gene family

MIPF0000008; MIR156

Sequence

207 reads, 7218 reads per million, 1 experiments

cauacuuuaugauguugcauauaucacacauacguuugagagugaugcugguugUUGACAGAAGAUAGAGAGCACuaaggaugacaugcaagcacauacauauaucaucacaccccauguggaugauaaaauauguauaacaaauucaagaaagagagagagagagagaucagauguagagggagagggagagaaagagacugcaucucuacucuuuuguGCUCUCUAUACUUCUGUCACCaccuuuauuucuucuucucucucaccuacauauacgcacagucacaucuaug
.........((((..(((.(((((.........((.((((((.((....(((.((.(((((((((((((((((((....................((((((((((((((.(((.....))))))))))...)))))))...................((((((((((((((((...........................))).)))))).)))))))))))))))))).)))))))))).)))............)).))))))...))))))).)))..))))........

Structure

cauacuuua    gu   a     cacacauac  --u      u  --------ugcu   u  U        -           ------------------------------------------------------------uaaggaugacaugcaagcac       ---       a   c 
         ugau  ugc uauau         gu   ugagag ga            ggu gU GACAGAAG AUAGAGAGCAC                                                                                auacaua   uaucauc cac c
         ||||  ||| |||||         ||   |||||| ||            ||| || |||||||| |||||||||||                                                                                |||||||   ||||||| ||| c
         acug  acg auaua         ca   acucuc cu            cca CA CUGUCUUC UAUCUCUCGug                                                                                uauguau   auaguag gug a
-guaucuac    ac   c     ---------  ucc      u  ucuucuuuauuu   C  -        A           uuuucucaucucuacgucagagaaagagagggagagggagauguagacuagagagagagagagagaaagaacuuaaacaa       aaa       -   u 

Annotation confidence Not enough data

Genome context

GL348715.1: 7799851-7800143 [-]

Mature aly-miR157c-5p

• Accession: MIMAT0017417
• Description: Arabidopsis lyrata aly-miR157c-5p mature miRNA
• Sequence: 55 - UUGACAGAAGAUAGAGAGCAC - 75
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR157c-3p

• Accession: MIMAT0017418
• Description: Arabidopsis lyrata aly-miR157c-3p mature miRNA
• Sequence: 221 - GCUCUCUAUACUUCUGUCACC - 241
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103