miRBase entry: aly-MIR159b

Stem-loop aly-MIR159b


Accession
MI0014516
Description
Arabidopsis lyrata aly-MIR159b precursor miRNA
Gene family
MIPF0000010; MIR159


Sequence

2306 reads, 80300 reads per million, 1 experiments
ggaagaagaagaggaaGAGCUCCUUGAAGUUCAAUGGaggguuuagcaggguaaaguaaagcugcuaagcuauggaucccauaaaccuuaucaaauucaaaauaaggauuuuuuauggauuccauaucucaggagcuuucacuuaccccuuuaauggcuucacucuucUUUGGAUUGAAGGGAGCUCUUcaucucuaccucc
(((.(.(((.((.((((((((((((..(((((((.(((((((..(((((((..((((((((((.((.((.((((((..(((((((((((((..........))))))....)))))))..)))))).)).)).)))))).))))..))))......)))..))))))).)))))))..)))))))))))).))))).).)))

Structure
   a a   a  g            GA       U       uu   ------    ua    -      g  a  c      uc       ----      caaa 
gga g aga ga gaaGAGCUCCUU  AGUUCAA GGagggu  agc      aggg  aagu aaagcu cu ag uaugga  ccauaaa    ccuuau    u
||| | ||| || ||||||||||||  ||||||| |||||||  |||      ||||  |||| |||||| || || ||||||  |||||||    ||||||     
ccu c ucu cu cUUCUCGAGGGA  UUAGGUU cuucuca  ucg      uccc  uuca uuucga ga uc auaccu  gguauuu    ggaaua    u
   c a   -  a            AG       U       cu   guaauu    ca    c      g  c  u      ua       uuua      aaac 


Annotation confidence High
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Genome context
GL348713.1: 7594092-7594293 [+]

Database links

Mature aly-miR159b-5p

Accession MIMAT0017425
Description Arabidopsis lyrata aly-miR159b-5p mature miRNA
Sequence 17 - GAGCUCCUUGAAGUUCAAUGG - 37
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR159b-3p

Accession MIMAT0017426
Description Arabidopsis lyrata aly-miR159b-3p mature miRNA
Sequence 169 - UUUGGAUUGAAGGGAGCUCUU - 189
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103