Stem-loop aly-MIR159c

Accession

MI0014517

Description

Arabidopsis lyrata aly-MIR159c precursor miRNA

Gene family

MIPF0000010; MIR159

Sequence

24 reads, 837 reads per million, 1 experiments

agaagGAGCUCCCUUCCUCCAAAACGaggaggacaagauuugaggaacuaaaaagcaaaaucuaagaguucauggauuccucauagagagugcguagguuaacaucuugaagaaagcacacuuuaaggggacugcaugaccucuuagauuaucucucucucucucucucucucuauacauccuucucuucucuucgUUUGGAUUGAAGGGAGCUCCUuuu
.(((((((((((((((.((((((.((((((((...(((...(((((.((....))...((((((((((.(((((.(.(((((.(((((.((((.....((((....)))).....)))).))))).))))).).))))).)))))))))).............................))))).)))))))))))))))))..))))))))))))))).

Structure

a               -C      A        aca   uuu     -----------------acuaaaaagcaa          u     g u     a     a    guagg    c 
 gaagGAGCUCCCUUC  UCCAAA CGaggagg   aga   gagga                             aaucuaagag ucaug a uccuc uagag gugc     uuaa a
 |||||||||||||||  |||||| ||||||||   |||   |||||                             |||||||||| ||||| | ||||| ||||| ||||     ||||  
 uuUCCUCGAGGGAAG  AGGUUU gcuucucu   ucu   uuccu                             uuagauucuc aguac u agggg auuuc cacg     aguu u
u               UU      -        ---   --c     acauaucucucucucucucucucucucua          c     g c     a     a    aaaga    c 

Annotation confidence Not enough data

Genome context

GL348716.1: 22446169-22446388 [+]

Mature aly-miR159c-5p

• Accession: MIMAT0017427
• Description: Arabidopsis lyrata aly-miR159c-5p mature miRNA
• Sequence: 6 - GAGCUCCCUUCCUCCAAAACG - 26
• Evidence: experimental ; Illumina [1]

Mature aly-miR159c-3p

• Accession: MIMAT0017428
• Description: Arabidopsis lyrata aly-miR159c-3p mature miRNA
• Sequence: 197 - UUUGGAUUGAAGGGAGCUCCU - 217
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089