miRBase entry: aly-MIR319a

Stem-loop aly-MIR319a


Accession
MI0014518
Description
Arabidopsis lyrata aly-MIR319a precursor miRNA
Gene family
MIPF0000010; MIR159


Sequence

1 reads, 35 reads per million, 1 experiments
ggauguuguaggaauauauauguagagAGAGCUUCCUUGAGUCCAUUCacaggucgugauaugauccaauuagcuuccgacucauucauccaaauaccgagucgccaaaauucgaacuagacucguuaaaugaaugaaugaugcgguagacaaauuggaucauugauucucuuugaUUGGACUGAAGGGAGCUCCCUcucucuucuguauuccaauugucu
((((...((.((((((((...(.(((((((((((((((.((((((.(((.(((..((.(.(((((((((((.(((.(((..((((((((.((..((.((((((................)))))).))..)).))))))))..))).)).).)))))))))))).))..))).))).)))))).))))))))))..))))))...)))))))).)).))))

Structure
    guu  a        uau u     --          G      U   c   uc  g u           a -  u   ac        c  aa  c      gccaaaa 
ggau   gu ggaauaua   g agagA  GAGCUUCCUU AGUCCA UCa agg  gu a augauccaauu g cu ccg  ucauucau ca  ua cgaguc       u
||||   || ||||||||   | |||||  |||||||||| |||||| ||| |||  || | ||||||||||| | || |||  |||||||| ||  || ||||||        
ucug   ua ccuuaugu   c ucucU  CUCGAGGGAA UCAGGU agu ucu  ua u uacuagguuaa c ga ggc  aguaagua gu  au gcucag       u
    --u  a        cuu -     CC          G      U   u   cu  g -           a a  u   gu        a  aa  u      aucaagc 


Annotation confidence Not enough data
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Genome context
GL348719.1: 7941288-7941508 [-]

Database links

Mature aly-miR319a-5p

Accession MIMAT0017429
Description Arabidopsis lyrata aly-miR319a-5p mature miRNA
Sequence 28 - AGAGCUUCCUUGAGUCCAUUC - 48
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR319a-3p

Accession MIMAT0017430
Description Arabidopsis lyrata aly-miR319a-3p mature miRNA
Sequence 177 - UUGGACUGAAGGGAGCUCCCU - 197
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103