miRBase entry: aly-MIR160c

Stem-loop aly-MIR160c


Accession
MI0014523
Description
Arabidopsis lyrata aly-MIR160c precursor miRNA
Gene family
MIPF0000032; MIR160


Sequence

121 reads, 4219 reads per million, 1 experiments
cauauaauaguuugucgucguuaUGCCUGGCUCCCUGUAUGCCAcgaguggauaccgauuuuguuauaaaaucggcugccggugGCGUACAAGGAGCCAAGCAUGaccauaagcauaug
.........((((((.(..(((((((.(((((((.((((((((((..((((...(((((((((...)))))))))))))..)))))))))).))))))).)))))))))))))).....

Structure
cauauaaua      c uc       C       C          ga    aua         u 
         guuugu g  guuaUGC UGGCUCC UGUAUGCCAc  gugg   ccgauuuug  
         |||||| |  ||||||| ||||||| ||||||||||  ||||   ||||||||| u
         cgaaua c  caGUACG ACCGAGG ACAUGCGgug  cguc   ggcuaaaau  
----guaua      - --       A       A          gc    ---         a 


Annotation confidence Not enough data
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Genome context
GL348720.1: 677267-677385 [+]

Database links

Mature aly-miR160c-5p

Accession MIMAT0017439
Description Arabidopsis lyrata aly-miR160c-5p mature miRNA
Sequence 24 - UGCCUGGCUCCCUGUAUGCCA - 44
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR160c-3p

Accession MIMAT0017440
Description Arabidopsis lyrata aly-miR160c-3p mature miRNA
Sequence 85 - GCGUACAAGGAGCCAAGCAUG - 105
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103