Accession
MI0014526
Description
Arabidopsis lyrata
aly-MIR162b precursor miRNA
Gene family
MIPF0000127;
MIR162_1
Sequence
82
reads,
2859
reads per million, 1 experiments
uuuuuuuaguucucuccucauuuuuauguuuggauuuagagugaagucgcuGGAGGCAGCGGUUCAUCGAUCaauuccugugaauauuuuuguuuucaaaagcaugaaucgaUCGAUAAACCUCUGCAUCCAGcgcuuacucuuccucaucuguuuaauaaucuauuugagaaugcucaaaaga
((((((.(((..((((.......((((...(((((..(((((((.(.(((((((.((((.((((.(((((((.((((.(((......(((((....)))))))).)))).))))))).)))).)))).))))))))))))))).....)))))....)))).......))))..))).))))))
((((((.(((..((((.......((((...(((((..(((((((.(.(((((((.((((.((((.(((((((.((((.(((......(((((....)))))))).)))).))))))).)))).)))).))))))))))))))).....)))))....)))).......))))..))).))))))
Structure
u uc cucauuu -guu ---uu a u G C C a c gaauau u
uuuuuu agu ucuc uuau uggau agaguga g cgcuGGA GCAG GGUU AUCGAUC auuc ugu uuuug u
|||||| ||| |||| |||| ||||| ||||||| | ||||||| |||| |||| ||||||| |||| ||| |||||
agaaaa ucg agag aaua gucua ucucauu c gcGACCU CGUC CCAA UAGCUag uaag acg aaaac u
c ua uuuaucu auuu cuccu - - A U A c u ------ u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
GL348718.1: 9808781-9808964 [-]
Database links
Mature aly-miR162b-5p
| Accession | MIMAT0017447 |
| Description | Arabidopsis lyrata aly-miR162b-5p mature miRNA |
| Sequence | 52 - GGAGGCAGCGGUUCAUCGAUC - 72 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR162b-3p
| Accession | MIMAT0017448 |
| Description | Arabidopsis lyrata aly-miR162b-3p mature miRNA |
| Sequence | 113 - UCGAUAAACCUCUGCAUCCAG - 133 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
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References
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