Stem-loop aly-MIR164a

Accession

MI0014527

Description

Arabidopsis lyrata aly-MIR164a precursor miRNA

Gene family

MIPF0000045; MIR164

Sequence

95 reads, 3312 reads per million, 1 experiments

guUGGAGAAGCAGGGCACGUGCAaaccaacaaacacgaaauccgucucauguguuuugCACGUACUCCCCUUCUCCAAC
((((((((((..(((.(((((((((.((......(((.....)))......)).))))))))).)))..))))))))))

Structure

          CA   C         c  acaaac   a 
guUGGAGAAG  GGG ACGUGCAaa ca      acg a
||||||||||  ||| ||||||||| ||      ||| a
CAACCUCUUC  CUC UGCACguuu gu      ugc u
          CC   A         u  guacuc   c 

Annotation confidence Not enough data

Genome context

GL348716.1: 23120175-23120253 [+]

Mature aly-miR164a-5p

• Accession: MIMAT0017449
• Description: Arabidopsis lyrata aly-miR164a-5p mature miRNA
• Sequence: 3 - UGGAGAAGCAGGGCACGUGCA - 23
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR164a-3p

• Accession: MIMAT0017450
• Description: Arabidopsis lyrata aly-miR164a-3p mature miRNA
• Sequence: 59 - CACGUACUCCCCUUCUCCAAC - 79
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103