Stem-loop aly-MIR166b

Accession

MI0014533

Description

Arabidopsis lyrata aly-MIR166b precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

1 open access papers mention aly-MIR166b
(2 sentences)

Sequence

114 reads, 3975 reads per million, 1 experiments

agagggauuuuucuuuugaggGGACUGUUGUCUGGCUCGAGGucucuuauucuaauacaaucucauuucaauagucucagaucugaugauugauuaggguuuuagcaucUCGGACCAGGCUUCAUUCCCCccaauuauuacucccucu
(((((((........(((.(((((.((..((((((.(((((((((...((((((((.((((((((..((..........))..))).)))))))))))))...)).))))))).))))))..)).))))).))).......)))))))

Structure

       uuuuucuu   a     C  UU      C       -  cuu        a     -   uu  aaua 
agaggga        uug ggGGA UG  GUCUGG UCGAGGu cu   auucuaau caauc uca  uc    g
|||||||        ||| ||||| ||  |||||| ||||||| ||   |||||||| ||||| |||  ||     
ucucccu        aac CCCCU AC  CGGACC GGCUcua ga   ugggauua guuag agu  ag    u
       -cauuauu   c     U  UU      A       c  uuu        -     u   cu  acuc 

Annotation confidence Not enough data

Genome context

GL348717.1: 20552770-20552917 [+]

Mature aly-miR166b-5p

• Accession: MIMAT0017461
• Description: Arabidopsis lyrata aly-miR166b-5p mature miRNA
• Sequence: 22 - GGACUGUUGUCUGGCUCGAGG - 42
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR166b-3p

• Accession: MIMAT0017462
• Description: Arabidopsis lyrata aly-miR166b-3p mature miRNA
• Sequence: 110 - UCGGACCAGGCUUCAUUCCCC - 130
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103