Stem-loop aly-MIR167c

Accession

MI0014541

Description

Arabidopsis lyrata aly-MIR167c precursor miRNA

Gene family

MIPF0000125; MIR167_2

Sequence

caguagcaguUAAGCUGCCAGCAUGAUCUUGucuuccucucuuaaguuucauauauaaucaaguuaauauaaagauuuuguacaauucuuguucuuauuauaugaucauagcuuagagagagagagacuAGGUCAUGCUGGUAGUUUCACcugcuaaug
...((((((..((((((((((((((((((.(((((.((((((((((((((((((((((.((((....((((((...)))))).....))))...))).)))))))....))))).))))))).))))).))))))))))))))))))...))))))...

Structure

cag      -uU                  U     c       -     ----       -   --u    -uuaa      g 
   uagcag   AAGCUGCCAGCAUGAUCU Gucuu cucucuu aaguu    ucauaua uaa   caag     uauaaa  
   ||||||   |||||||||||||||||| ||||| ||||||| |||||    ||||||| |||   ||||     |||||| a
   aucguc   UUUGAUGGUCGUACUGGA cagag gagagag uucga    aguauau auu   guuc     auguuu  
gua      CAC                  u     a       a     uacu       u   cuu    uuaac      u 

Annotation confidence Not enough data

Genome context

GL348715.1: 1657189-1657347 [-]

Mature aly-miR167c-5p

• Accession: MIMAT0017477
• Description: Arabidopsis lyrata aly-miR167c-5p mature miRNA
• Sequence: 11 - UAAGCUGCCAGCAUGAUCUUG - 31
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR167c-3p

• Accession: MIMAT0017478
• Description: Arabidopsis lyrata aly-miR167c-3p mature miRNA
• Sequence: 130 - AGGUCAUGCUGGUAGUUUCAC - 150
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103