Stem-loop aly-MIR167d

Accession

MI0014542

Description

Arabidopsis lyrata aly-MIR167d precursor miRNA

Gene family

MIPF0000023; MIR167_1

Sequence

215 reads, 7497 reads per million, 1 experiments

gaucuauaucuaugcugguuuuuagaggcUGAAGCUGCCAGCAUGAUCUGGuaauugcuacauacgacauacacacauauacuaguuaauuuccacaccuauaaaaguuuuuuuccuacaacuuaaagcuuuuuuccuuccucuuuuuaauaauuagugaucucuaguucuuugccuacuuguaauauauauuuacgguggauucaugcauguguguauauauauacauaguuuacaugcaugcauuuuguguauguguguguguauagauaguaguacuAGGUCAUCCUGCAGCUUCAGUcacuaaaucaccaacaauaucaaauc
............((.((((.(((((.((((((((((((.((.(((((((((((.((((((..((..((((((((((((((((..(((((.............(((((((((.............))))))))).............)))))((((((......))))))......(((((.((((.......)))))))))....(((((((((((((..(((....)))...)))))))))))))...)))))))))))))))).))..))))))))))))))))).)))))))))))))).)))))..)))).))..........

Structure

gaucuauaucua  c    -u     a            C  C           a      ca  cg                uaguuaauuuccacaccuauaaaaguuuuuuuccuacaacuuaaagcuuuuuuccuuccucuuuuuaauaauuagugaucucuaguucuuugccuacuuguaauauauauuuacgguggauuc             -ua   a 
            ug uggu  uuuag ggcUGAAGCUGC AG AUGAUCUGGua uugcua  ua  acauacacacauauac                                                                                                                           augcaugugugua   uau u
            || ||||  ||||| |||||||||||| || ||||||||||| ||||||  ||  ||||||||||||||||                                                                                                                           |||||||||||||   |||  
            ac acca  aaauc cUGACUUCGACG UC UACUGGAucau gaugau  au  uguguguguguaugug                                                                                                                           uacguacguacau   aua a
--cuaaacuaua  a    cu     a            -  C           -      ag  -a                ------------------------------------------------------------------------------------------------------------------------uuu             uug   c 

Annotation confidence Not enough data

Genome context

GL348713.1: 16567499-16567825 [-]

Mature aly-miR167d-5p

• Accession: MIMAT0017479
• Description: Arabidopsis lyrata aly-miR167d-5p mature miRNA
• Sequence: 30 - UGAAGCUGCCAGCAUGAUCUGG - 51
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR167d-3p

• Accession: MIMAT0017480
• Description: Arabidopsis lyrata aly-miR167d-3p mature miRNA
• Sequence: 281 - AGGUCAUCCUGCAGCUUCAGU - 301
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103