miRBase entry: aly-MIR168b

Stem-loop aly-MIR168b


Accession
MI0014544
Description
Arabidopsis lyrata aly-MIR168b precursor miRNA
Gene family
MIPF0000081; MIR168


Sequence

253 reads, 8821 reads per million, 1 experiments
agagagaaauacgaugauuuaaaguuaccggcggucucggauUCGCUUGGUGCAGGUCGGGAAcugauuagcugacaauuacacguguguugucaugguugguuugugagauCCCGUCUUGUAUCAACUGAAUcggaguccgaggugaaaaaaauaaggaucuuacuuucagaucu
.(((((..........((((....(((((..(((.(((.((((((.((((((((((.(((((((.((((((((((((((.((....))))))))..)))))))).))....))))).)))))))))).)))))).))).))).)))))...))))..........)))))......

Structure
-----a     aaauacgaug    aaag     gg   u   g      C          U     ----  u        --      u  a 
      gagag          auuu    uuacc  cgg cuc gauUCG UUGGUGCAGG CGGGA    Ac gauuagcu  gacaau ac c
      |||||          ||||    |||||  ||| ||| |||||| |||||||||| |||||    || ||||||||  |||||| ||  
      cuuuc          uaaa    agugg  gcc gag cUAAGU AACUAUGUUC GCCCu    ug uugguugg  cuguug ug g
ucuaga     auucuaggaa    -aaa     -a   u   g      C          U     agag  u        ua      -  u 


Annotation confidence Not enough data
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Genome context
GL348720.1: 2067187-2067362 [+]

Database links

Mature aly-miR168b-5p

Accession MIMAT0017483
Description Arabidopsis lyrata aly-miR168b-5p mature miRNA
Sequence 43 - UCGCUUGGUGCAGGUCGGGAA - 63
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR168b-3p

Accession MIMAT0017484
Description Arabidopsis lyrata aly-miR168b-3p mature miRNA
Sequence 113 - CCCGUCUUGUAUCAACUGAAU - 133
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103