miRBase entry: aly-MIR169c

Stem-loop aly-MIR169c


Accession
MI0014547
Description
Arabidopsis lyrata aly-MIR169c precursor miRNA
Gene family
MIPF0000037; MIR169_2


Sequence

2 reads, 70 reads per million, 1 experiments
gucucaucuaaagccuugaaugugggaaaaaggccauuguuguuCAGCCAAGGAUGACUUGCCGGuagcuuuguauauuuacucuauauucgguuuauauuauggagauuaugcuuuauauauauauauacauaguuuuaauugauuuuuuuucguacguacguaaucuaauacgaaaaaguauuuacuuauuuauauguguguuggugagauguguaaacaaagcaagcccGGCAAGUCAUCUCUGGCUAUGcaacugccucuuccucucauucuaggcuuacgaugacac
((.(((((..((((((.(((((.(((((..((((....(((((..(((((.((((((((((((((..(((((((.......(((((((............))))))).((((((.((.(((....(((((((((....(((..(((.((((((((((..............)))))))))).)))...)))....)))))))))..))).)).)))))))))))))....)))))))))))))).)))))..))))).)))).)))))..))))).))))))..))))).))

Structure
  c     ua      u     -u     aa    cauu     uC     A              --ua       auauuuacucuauauucgguuuauauuauggaga      u  a   auau         guuu   -uu   u          cguacg 
gu ucauc  aagccu gaaug  gggaa  aggc    guugu  AGCCA GGAUGACUUGCCGG    gcuuugu                                  uuaugc uu uau    auauacaua    uaa   gau uuuuuucgua      u
|| |||||  |||||| |||||  |||||  ||||    |||||  ||||| ||||||||||||||    |||||||                                  |||||| || |||    |||||||||    |||   ||| ||||||||||       
ca aguag  uucgga cuuac  uccuu  uccg    caacG  UCGGU UCUACUGAACGGcc    cgaaaca                                  aaugug ag gug    uguguguau    auu   uua gaaaaagcau      a
  c     ca      u     uc     -c    ---u     UA     C              cgaa       ----------------------------------      u  a   --gu         auuu   cau   u          aaucua 


Annotation confidence Not enough data
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Genome context
GL348719.1: 23073353-23073644 [+]

Database links

Mature aly-miR169c-5p

Accession MIMAT0017489
Description Arabidopsis lyrata aly-miR169c-5p mature miRNA
Sequence 45 - CAGCCAAGGAUGACUUGCCGG - 65
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR169c-3p

Accession MIMAT0017490
Description Arabidopsis lyrata aly-miR169c-3p mature miRNA
Sequence 233 - GGCAAGUCAUCUCUGGCUAUG - 253
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103