miRBase entry: aly-MIR169f

Stem-loop aly-MIR169f


Accession
MI0014550
Description
Arabidopsis lyrata aly-MIR169f precursor miRNA
Gene family
MIPF0000037; MIR169_2


Sequence

13 reads, 453 reads per million, 1 experiments
uguaucagagggucuugcaugaaggaauaaagaauggaauUGAGCCAAGGAUGACUUGCCGguuuaaacacaaccggauuaugaccauugauuuggucucauucacaaucuguugauucgugucugGCAAGUUGACCUUGGCUCUGCuucguucucuauucuuccauguuagauuccagauaua
((((((.(.((((((.(((((.(((((((.((((((((...(((((((((..((((((((((........((((.(((((..(((((......)))))........)))))))))........))))))))))..)))))))))...)))))))).))))))).))))).))))))).))))))

Structure
      a a      u     a       a        auU         AU          uuuaaaca    c     ------au     uu 
uguauc g gggucu gcaug aggaaua agaaugga   GAGCCAAGG  GACUUGCCGg        caac ggauu        gacca  g
|||||| | |||||| ||||| ||||||| ||||||||   |||||||||  ||||||||||        |||| |||||        |||||   
auauag c cuuaga uguac uucuuau ucuugcuu   CUCGGUUCC  UUGAACGguc        guug ucuaa        cuggu  a
      a -      u     c       c        CGU         AG          ugugcuua    -     cacuuacu     uu 


Annotation confidence Not enough data
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Genome context
GL348715.1: 6024138-6024321 [-]

Database links

Mature aly-miR169f-5p

Accession MIMAT0017495
Description Arabidopsis lyrata aly-miR169f-5p mature miRNA
Sequence 41 - UGAGCCAAGGAUGACUUGCCG - 61
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR169f-3p

Accession MIMAT0017496
Description Arabidopsis lyrata aly-miR169f-3p mature miRNA
Sequence 127 - GCAAGUUGACCUUGGCUCUGC - 147
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103