miRBase entry: aly-MIR169i

Stem-loop aly-MIR169i


Accession
MI0014553
Description
Arabidopsis lyrata aly-MIR169i precursor miRNA
Gene family
MIPF0000012; MIR169_1


Sequence

9 reads, 314 reads per million, 1 experiments
gaaggagaugucaaagaugaguaggagaaucauauuuggUAGCCAAGGAUGACUUGCCUGauuccuuugcguaaaaugguuagugucauguuugacaaagugacuaucaauuacaucaagcgaugaccauuuugcuuauaaaaaagaugucaGGCAGUCUCCUUGGAUAUCcuuauauguucuucucuuucaucucagacauucaucuuc
(((((.((((((..(((((((.(((((((.(((((..((...(((((((.((((.(((((((..((((..(((((((((((...(((..((((((.....(((...)))......)))))))))))))))))))).......))))..))))))))))))))))))....))..))))))))))))..)))))))..)))).)).)))))

Structure
     a  -    aa       -u       u     uu  -UAG       U    U       uc    -----gc           agu   au      -caaag   c 
gaagg ga uguc  agaugag  aggagaa cauau  gg    CCAAGGA GACU GCCUGau  cuuu       guaaaaugguu   guc  guuuga      uga  
||||| || ||||  |||||||  ||||||| |||||  ||    ||||||| |||| |||||||  ||||       |||||||||||   |||  ||||||      ||| u
cuucu cu acag  ucuacuu  ucuucuu guaua  cC    GGUUCCU CUGA CGGacug  gaaa       cguuuuaccag   uag  cgaacu      acu  
     a  u    ac       uc       -     uu  UAUA       -    -       ua    aaauauu           ---   --      acauua   a 


Annotation confidence Not enough data
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Genome context
GL348717.1: 3130574-3130783 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR169i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR169i-5p

Accession MIMAT0017501
Description Arabidopsis lyrata aly-miR169i-5p mature miRNA
Sequence 40 - UAGCCAAGGAUGACUUGCCUG - 60
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR169i-3p

Accession MIMAT0017502
Description Arabidopsis lyrata aly-miR169i-3p mature miRNA
Sequence 153 - GGCAGUCUCCUUGGAUAUC - 171
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103