Accession
MI0014555
Description
Arabidopsis lyrata
aly-MIR169k precursor miRNA
Gene family
MIPF0000012;
MIR169_1
Sequence
5
reads,
174
reads per million, 1 experiments
gaaggagaugucaaagaugaauaagagaaccacauuuggUAGCCAAGGAUGACUUGCCUGuuucuuugaacaaaaugguuggugucauguuugaugugacuacaaguuauaucaagaaugacauuuugcuuauaaaaagacaucaGGCAGUCUCCUUGGCUAUCcuuauauguucuucuuucucaucucagacauuuaccuuc
((((((((((((..((((((..((((((((.......((((((((((((.((((.(((((..(((((.........(((.((((((((.((((((((((((...)))))))))))).))))))))..))).....)))))...))))))))))))))))))))).......)))).))))..))))))..))))))).)))))
((((((((((((..((((((..((((((((.......((((((((((((.((((.(((((..(((((.........(((.((((((((.((((((((((((...)))))))))))).))))))))..))).....)))))...))))))))))))))))))))).......)))).))))..))))))..))))))).)))))
Structure
- aa au - cacauuu U U -uu gaacaaaau -u g a
gaagg agauguc agauga aaga gaac ggUAGCCAAGGA GACU GCCUG ucuuu ggu ggugucau uuugaugugacu
||||| ||||||| |||||| |||| |||| |||||||||||| |||| ||||| ||||| ||| |||||||| |||||||||||| c
cuucc uuuacag ucuacu uucu cuug CUAUCGGUUCCU CUGA CGGac agaaa ucg uuacagua gaacuauauuga
a ac cu u uauauuc - - uac ----aauau uu a a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
GL348717.1: 3143745-3143947 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from aly-MIR169k
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aly-miR169k-5p
| Accession | MIMAT0017505 |
| Description | Arabidopsis lyrata aly-miR169k-5p mature miRNA |
| Sequence | 40 - UAGCCAAGGAUGACUUGCCUG - 60 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR169k-3p
| Accession | MIMAT0017506 |
| Description | Arabidopsis lyrata aly-miR169k-3p mature miRNA |
| Sequence | 146 - GGCAGUCUCCUUGGCUAUC - 164 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
References
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