Accession
MI0014561
Description
Arabidopsis lyrata
aly-MIR171b precursor miRNA
Gene family
MIPF0000030;
MIR171_1
Sequence
39
reads,
1360
reads per million, 1 experiments
gagugauuuuauguaagguaacgcgAGAUAUUAGUGCGGUUCAAUCaaauagucguccucuuaacucauggagaucgguguuguucgaUUGAGCCGUGCCAAUAUCACGcgguaaaccaaaauggcaaagaucgauc
((.(((((((.(((..(((..((((.((((((.(((((((((((((.((((((((..((((........))))..)))..))))).))))))))))))).)))))).))))....)))......)))))))))).))
((.(((((((.(((..(((..((((.((((((.(((((((((((((.((((((((..((((........))))..)))..))))).))))))))))))).)))))).))))....)))......)))))))))).))
Structure
g a ----aa --aa A A a -- uc uaa ga ugauuuu ugu ggu cgcg GAUAUU GUGCGGUUCAAUC aauag ucg cucu c || ||||||| ||| ||| |||| |||||| ||||||||||||| ||||| ||| |||| cu gcuagaa acg cca gcGC CUAUAA CGUGCCGAGUUag uuguu ggc gagg u a - guaaaa aaug A C c gu ua uac
Annotation confidence
High
Do you think this miRNA is real?
Genome context
GL348713.1: 4720122-4720258 [-]
Database links
Mature aly-miR171b-5p
| Accession | MIMAT0017517 |
| Description | Arabidopsis lyrata aly-miR171b-5p mature miRNA |
| Sequence | 26 - AGAUAUUAGUGCGGUUCAAUC - 46 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
|
Mature aly-miR171b-3p
| Accession | MIMAT0017518 |
| Description | Arabidopsis lyrata aly-miR171b-3p mature miRNA |
| Sequence | 89 - UUGAGCCGUGCCAAUAUCACG - 109 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
|
References
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