miRBase entry: aly-MIR171c

Stem-loop aly-MIR171c


Accession
MI0014562
Description
Arabidopsis lyrata aly-MIR171c precursor miRNA
Gene family
MIPF0000030; MIR171_1


Sequence

59 reads, 2057 reads per million, 1 experiments
ggacaucgaauacgAGAUAUUGGUGCGGUUCAAUCagaaaacuguacucuuuuguuuuaaagaucgguuuguuugaUUGAGCCGUGCCAAUAUCACGuguuuaaauaguuu
.......(((((((.(((((((((((((((((((((((((((((...(((((......))))).)))))).))))))))))))))))))))))).))))))).........

Structure
--ggacauc       A                       -      uac     ug 
         gaauacg GAUAUUGGUGCGGUUCAAUCaga aaacug   ucuuu  u
         ||||||| ||||||||||||||||||||||| ||||||   |||||   
         uuuguGC CUAUAACCGUGCCGAGUUaguuu uuuggc   agaaa  u
uuugauaaa       A                       g      --u     uu 


Annotation confidence High
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Genome context
GL348714.1: 1951192-1951302 [+]

Database links

Mature aly-miR171c-5p

Accession MIMAT0017519
Description Arabidopsis lyrata aly-miR171c-5p mature miRNA
Sequence 15 - AGAUAUUGGUGCGGUUCAAUC - 35
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR171c-3p

Accession MIMAT0017520
Description Arabidopsis lyrata aly-miR171c-3p mature miRNA
Sequence 77 - UUGAGCCGUGCCAAUAUCACG - 97
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103