Stem-loop sequence aly-MIR171c

Accession MI0014562
Description Arabidopsis lyrata miR171c stem-loop
Gene family MIPF0000030; MIR171_1
Stem-loop 
--ggacauc       a        ug             -      uac     ug 
         gaauacg gauauugg  cgguucaaucaga aaacug   ucuuu  u
         ||||||| ||||||||  ||||||||||||| ||||||   |||||   
         uuugugc cuauaacc  gccgaguuaguuu uuuggc   agaaa  u
uuugauaaa       a        gu             g      --u     uu
Get sequence
Deep sequencing
140 reads, 1 experiments

Mature sequence aly-miR171c-5p

Accession MIMAT0017519
Previous IDs aly-miR171c*
Sequence

15 -  

agauauuggugcgguucaauc

 - 35

Get sequence
Deep sequencing 41 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

Mature sequence aly-miR171c-3p

Accession MIMAT0017520
Previous IDs aly-miR171c
Sequence

77 -  

uugagccgugccaauaucacg

 - 97

Get sequence
Deep sequencing 99 reads, 1 experiments
Evidence experimental; Solexa [1], SOLiD [2]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2
PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus" Ma Z, Coruh C, Axtell MJ Plant Cell. 22:1090-1103(2010).