Stem-loop aly-MIR390a

Accession

MI0014569

Description

Arabidopsis lyrata aly-MIR390a precursor miRNA

Gene family

MIPF0000101; MIR390

Sequence

9 reads, 314 reads per million, 1 experiments

ccaaaaaacaaguagagaagaaucuguaAAGCUCAGGAGGGAUAGCGCCaugaugaucuuauuucauaucgauuuuuuggCGCUAUCCAUCCUGAGUUUCAuuggcucuucuuacuacaauguaaaagg
.......(((.((((((((((.((.((.((((((((((.(((((((((((....((((............))))...))))))))))).)))))))))).)).)).))))))..))))..)))......

Structure

ccaaaaa   -a    --      a  u  a          G           ugau    uuauu 
       aca  guag  agaaga uc gu AAGCUCAGGA GGAUAGCGCCa    gauc     u
       |||  ||||  |||||| || || |||||||||| |||||||||||    ||||      
       ugu  cauc  ucuucu gg uA UUUGAGUCCU CCUAUCGCggu    uuag     c
-ggaaaa   aa    au      c  u  C          A           -uuu    cuaua 

Annotation confidence Not enough data

Genome context

GL348716.1: 18611034-18611162 [+]

Mature aly-miR390a-5p

• Accession: MIMAT0017533
• Description: Arabidopsis lyrata aly-miR390a-5p mature miRNA
• Sequence: 29 - AAGCUCAGGAGGGAUAGCGCC - 49
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR390a-3p

• Accession: MIMAT0017534
• Description: Arabidopsis lyrata aly-miR390a-3p mature miRNA
• Sequence: 81 - CGCUAUCCAUCCUGAGUUUCA - 101
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103