miRBase entry: aly-MIR391

Stem-loop aly-MIR391


Accession
MI0014571
Description
Arabidopsis lyrata aly-MIR391 precursor miRNA
Gene family
MIPF0001151; MIR391


Sequence

178 reads, 6172 reads per million, 1 experiments
gcaaacaaagauuugcUUCGCAGGAGAGAUAGCGCCAccaccucuucuaagaaguuaaccaguggugACGGUAUCUCUCCUACGUAGCaauccuuauauaugc
(((....(((..(((((.((.((((((((((.((.((((((..((((...)))).......)))))).)).)))))))))).)).)))))..))).....)))

Structure
   -aaca   au     U  C          G  C      -----cu    u 
gca     aag  uugcU CG AGGAGAGAUA CG CAccac       cuuc  
|||     |||  ||||| || |||||||||| || ||||||       |||| a
cgu     uuc  aaCGA GC UCCUCUCUAU GC guggug       gaag  
   auaua   cu     U  A          G  A      accaauu    a 


Annotation confidence Not enough data
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Genome context
GL348720.1: 19524569-19524671 [+]

Database links

Mature aly-miR391-5p

Accession MIMAT0017537
Description Arabidopsis lyrata aly-miR391-5p mature miRNA
Sequence 17 - UUCGCAGGAGAGAUAGCGCCA - 37
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR391-3p

Accession MIMAT0017538
Description Arabidopsis lyrata aly-miR391-3p mature miRNA
Sequence 68 - ACGGUAUCUCUCCUACGUAGC - 88
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103