Accession
MI0014572
Description
Arabidopsis lyrata
aly-MIR393a precursor miRNA
Gene family
MIPF0000083;
MIR393
Sequence
3
reads,
105
reads per million, 1 experiments
agcaacuagaggaaggaUCCAAAGGGAUCGCAUUGAUCCuaauaaaggugaauuaccccaaucuuuucuuaauaauuagcaaacaaaucaaaaaaauuugcuugguuuuggAUCAUGCUAUCUCUUUGGAUUcauccuucgguagcu
(((.(((.(((((.((((((((((((((.((((.(((((......(((((((((..........(((((........)).)))...........)))))))))......))))))))).)))))))))))))).))))).))).)))
(((.(((.(((((.((((((((((((((.((((.(((((......(((((((((..........(((((........)).)))...........)))))))))......))))))))).)))))))))))))).))))).))).)))
Structure
a a a C U uaauaa -accccaaucu - uaa agc acu gagga ggaUCCAAAGGGAU GCAU GAUCC aggugaauu uuu cu u ||| ||| ||||| |||||||||||||| |||| ||||| ||||||||| ||| || ucg ugg uuccu cUUAGGUUUCUCUA CGUA CUAgg uucguuuaa aaa ga a a c a U - uuuugg aaaaacuaaac c uua
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
GL348716.1: 19396119-19396265 [+]
Database links
Mature aly-miR393a-5p
| Accession | MIMAT0017539 |
| Description | Arabidopsis lyrata aly-miR393a-5p mature miRNA |
| Sequence | 18 - UCCAAAGGGAUCGCAUUGAUCC - 39 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
Mature aly-miR393a-3p
| Accession | MIMAT0017540 |
| Description | Arabidopsis lyrata aly-miR393a-3p mature miRNA |
| Sequence | 112 - AUCAUGCUAUCUCUUUGGAUU - 132 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
References
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