miRBase entry: aly-MIR393b

Stem-loop aly-MIR393b


Accession
MI0014573
Description
Arabidopsis lyrata aly-MIR393b precursor miRNA
Gene family
MIPF0000083; MIR393


Sequence

17 reads, 593 reads per million, 1 experiments
agcaacuagagaaagcaUCCAAAGGGAUCGCAUUGAUCCuaauuaagcugauuuauuccccaauauuuuauuuuccucauucgaaaguuggagaaaaaaaaaaaaaauucuaaacauuugcuuucuuuuccggAUCAUGCGAUCUCUUUGGAUUcauucuuugguagcu
(((.(((((((((.(.(((((((((((((((((.(((((.....((((((.((((..........((((.((((((.............)))))).))))..........))))))...))))........)))))))))))))))))))))).).))))))))).)))

Structure
   a         a c                 U     ---uaauu    ---  a    uuccccaaua    a      ucauu 
agc acuagagaa g aUCCAAAGGGAUCGCAU GAUCC        aagc   ug uuua          uuuu uuuucc     c
||| ||||||||| | ||||||||||||||||| |||||        ||||   || ||||          |||| ||||||     g
ucg ugguuucuu c UAGGUUUCUCUAGCGUA CUAgg        uucg   ac aaau          aaaa aagagg     a
   a         a U                 -     ccuuuucu    uuu  -    cuuaaaaaaa    a      uugaa 


Annotation confidence Not enough data
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Genome context
GL348717.1: 17660786-17660954 [+]

Database links

Mature aly-miR393b-5p

Accession MIMAT0017541
Description Arabidopsis lyrata aly-miR393b-5p mature miRNA
Sequence 18 - UCCAAAGGGAUCGCAUUGAUCC - 39
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR393b-3p

Accession MIMAT0017542
Description Arabidopsis lyrata aly-miR393b-3p mature miRNA
Sequence 134 - AUCAUGCGAUCUCUUUGGAUU - 154
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103