miRBase entry: aly-MIR394b

Stem-loop aly-MIR394b


Accession
MI0014575
Description
Arabidopsis lyrata aly-MIR394b precursor miRNA
Gene family
MIPF0000100; MIR394


Sequence

21 reads, 732 reads per million, 1 experiments
gaucaugcggguuugacaaaagagucucuuacagagaucuUUGGCAUUCUGUCCACCUCCucucucuauauguauauguaugagcgcugucuugugaggggAGGUGGACAUAUUGCCAACAgagaucuguuaggguuucuuuguaaaaccccucaugauu
(((((((.((((((.(((((.(((.((((.(((((..(((((((((...((((((((((((((((((((((....))))).)))(((......)))))))))))))))))...)))))).)))..))))).)))).)))))))).))))))..)))))))

Structure
       -c      g     a   u    u     ga   -      UUC              ------------   -     g 
gaucaug  ggguuu acaaa gag cucu acaga  ucu UUGGCA   UGUCCACCUCCucu            cuc uauau u
|||||||  |||||| ||||| ||| |||| |||||  ||| ||||||   ||||||||||||||            ||| |||||  
uuaguac  cccaaa uguuu cuu ggga ugucu  agA AACCGU   ACAGGUGGAgggga            gag augua a
       uc      a     -   u    u     ag   C      UAU              guguucugucgc   u     u 


Annotation confidence Not enough data
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Genome context
GL348714.1: 17011842-17012001 [+]

Database links

Mature aly-miR394b-5p

Accession MIMAT0017545
Description Arabidopsis lyrata aly-miR394b-5p mature miRNA
Sequence 41 - UUGGCAUUCUGUCCACCUCC - 60
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR394b-3p

Accession MIMAT0017546
Description Arabidopsis lyrata aly-miR394b-3p mature miRNA
Sequence 102 - AGGUGGACAUAUUGCCAACA - 121
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103