Accession
MI0014582
Description
Arabidopsis lyrata
aly-MIR396b precursor miRNA
Gene family
MIPF0000047;
MIR396
Sequence
595
reads,
20746
reads per million, 1 experiments
gaagaagaagaagaagauccuggucauauuuUUCCACAGCUUUCUUGAACUUucuuuuucauuuccauuguuuuuuuuuuucuaaaccaaaaaaaaagaucucuaaaauuuagcauuuuggaaacaaagaagaaGCUCAAGAAAGCUGUGGGAAAacaugacaauucaggguuuuacuccauugauuc
.........((..((((((((((((((.((((((((((((((((((((.(((.((((((..((((((.(((((((((((((........)))))))))).............)))...))))))..))))))))).)))))))))))))))))))).)))))....)))))))))..)).........
.........((..((((((((((((((.((((((((((((((((((((.(((.((((((..((((((.(((((((((((((........)))))))))).............)))...))))))..))))))))).)))))))))))))))))))).)))))....)))))))))..)).........
Structure
gaagaagaa ag ---- a A u ca --u ------------- cua
ga aagauccug gucau uuuUUCCACAGCUUUCUUGA CUU cuuuuu uuucca ugu uuuuuuuuuu a
|| ||||||||| ||||| |||||||||||||||||||| ||| |||||| |||||| ||| ||||||||||
cu uuuugggac cagua aAAAGGGUGUCGAAAGAACU Gaa gaagaa aaaggu acg agaaaaaaaa a
cuuaguuac ca uuaa c C - ac uuu auuuaaaaucucu acc
Annotation confidence
High
Do you think this miRNA is real?
Genome context
GL348719.1: 18203535-18203722 [+]
Database links
Mature aly-miR396b-5p
| Accession | MIMAT0017559 |
| Description | Arabidopsis lyrata aly-miR396b-5p mature miRNA |
| Sequence | 32 - UUCCACAGCUUUCUUGAACUU - 52 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
|
Mature aly-miR396b-3p
| Accession | MIMAT0017560 |
| Description | Arabidopsis lyrata aly-miR396b-3p mature miRNA |
| Sequence | 135 - GCUCAAGAAAGCUGUGGGAAA - 155 |
| Evidence |
experimental
Illumina [1], SOLiD [2] |
| Database links |
|
References
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