Stem-loop aly-MIR400

Accession

MI0014594

Description

Arabidopsis lyrata aly-MIR400 precursor miRNA

Gene family

MIPF0001157; MIR400

Sequence

cgaccaaaagguauauucuuuaauuguucuuaggaagauguugaagauuguuUAUGAGAGUAUUAUAAGUCACuacauuugguaugcaaaaguuuuguuucccaaacgaaguGACUUAUAAUAAUCUCAUGAAuggauuuugcaacucuuaaagagaaaauuauaauucuuuuguug
((((.((((((...(((...(((((.(((((...((((.((((((((((.(((((((((.((((((((((((((.(.(((((...(((((...)))))...))))).).)))))))))))))).)))))))))..)))))).))))))))...)))))))))).)))))))))))))

Structure

    c      uau   cuu     g     agg    u    -      -g         G              a a     uau     a 
cgac aaaagg   auu   uaauu uucuu   aaga guug aagauu  uuUAUGAGA UAUUAUAAGUCACu c uuugg   gcaaa  
|||| ||||||   |||   ||||| |||||   |||| |||| ||||||  ||||||||| |||||||||||||| | |||||   ||||| g
guug uuuucu   uaa   auuaa aagag   uucu caac uuuuag  AAGUACUCU AUAAUAUUCAGuga g aaacc   uguuu  
    -      ---   --u     -     aaa    -    g      gu         A              a c     cuu     u 

Annotation confidence Not enough data

Genome context

GL348713.1: 14934184-14934360 [+]

Mature aly-miR400-5p

• Accession: MIMAT0017583
• Description: Arabidopsis lyrata aly-miR400-5p mature miRNA
• Sequence: 53 - UAUGAGAGUAUUAUAAGUCAC - 73
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR400-3p

• Accession: MIMAT0017584
• Description: Arabidopsis lyrata aly-miR400-3p mature miRNA
• Sequence: 113 - GACUUAUAAUAAUCUCAUGAA - 133
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103