miRBase entry: aly-MIR408

Stem-loop aly-MIR408


Accession
MI0014596
Description
Arabidopsis lyrata aly-MIR408 precursor miRNA
Gene family
MIPF0000102; MIR408


Sequence

aaagguuagauugguauugcaaugaaagaagugguaaugauagagagagaCAGGGAACAAGCAGAGCAUGGauugaguuuacuaaaacauuaaacgacucuguuuugucucuacccAUGCACUGCCUCUUCCCUGGCucccucuuuucucucucucucucucucucucccucucucuauuucuuucucuccuuucauuucaauggauuuuu
.........((((......))))(((((((((((....((.((((((((((((((((...((((.((((((...(((...((.((((((...........)))))))))))...)))))).))))...))))))).......................)))))))))...))...)))))))))))..(((............))).....

Structure
--aaagguuagauugguauugcaau           uaau  --u         -----------------------       CAA    A      auu   uuu  u      uuaa 
                         gaaagaagugg    ga   agagagaga                       CAGGGAA   GCAG GCAUGG   gag   ac aaaaca    a
                         |||||||||||    ||   |||||||||                       |||||||   |||| ||||||   |||   || ||||||    c
                         cuuucuuuauc    cu   ucucucucu                       GUCCCUU   CGUC CGUAcc   cuc   ug uuuugu    g
uuuuuagguaacuuuacuuuccucu           -ucu  ccc         cucucucucucuuuucucccuCG       CUC    A      cau   ---  -      cuca 


Annotation confidence Not enough data
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Genome context
GL348716.1: 22869851-22870061 [+]

Database links

Mature aly-miR408-5p

Accession MIMAT0017587
Description Arabidopsis lyrata aly-miR408-5p mature miRNA
Sequence 51 - CAGGGAACAAGCAGAGCAUGG - 71
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR408-3p

Accession MIMAT0017588
Description Arabidopsis lyrata aly-miR408-3p mature miRNA
Sequence 117 - AUGCACUGCCUCUUCCCUGGC - 137
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103