miRBase entry: aly-MIR824

Stem-loop aly-MIR824


Accession
MI0014603
Description
Arabidopsis lyrata aly-MIR824 precursor miRNA
Gene family
MIPF0000442; MIR824


Sequence

234 reads, 8159 reads per million, 1 experiments
aguugucucucaugucUAGACCAUUUGUGAGAAGGGAguuuuuguuugcaccaauacccaccaaucucuaaguuuguaagaaguauuaugcucaauuaaggaaaauagcuaguucaacuuaccacacuacccuuuuacaaacuauccuauauguuagaugcuagcauggcguaauuuuguguucucauucugcagcaggguuaguuucuuguguaccucuagauauuuauucucuugcugcguaggguucccaagcugccaaaaacuuuucaaaauuagagaucuguuccccacuaacccccauccaauaaggaaggucuaccuguauguagcucacagcuauuaaagcugugcucgcgucuugguuuuacuguuuuaguuaccccaugaaaucugauccuucagaaguuagguauagaaguaagucgauuaaguucauucaugacuuuuccagauguugcacagauaacuuuuuuauuuguauuauaacuaguccaagccgauucucgaaaucauauaaaaucauuuacaccuuggucaugguagccaagaauuuguaucuuacacuagguuuccuaauaaauaaaaauggggaguggggagguguuugguuauauucCCUUCUCAUCGAUGGUCUAGAugugcgaggugacu
(((((((((.(((((((((((((((.(((((((((((((........(((((.......((..((((((((.((((..((((((..(((..((.......))..)))(((((((((((..................................))).)).)))))).(((((....((((.(..(((....((((((((((..(((.(((.(.......).))).))).....))))))))))..)))..).)))).)))))...)))))))))).))))))))..))((((((((...((((((((.....))..((.((((......))))))(((((((.....))))))).(((.(..(((((((.((((((.((((((((...(((..(((((....)))))..))))))).....(((((((....(((((.......))))).....))).))))((((((((.....)))))))))))).))).)))..)))))))..).)))......................((((((.......))))))....((((...)))).((((...))))..........)))))))))))))))))))........))))))))))))).))))))))))))))).)))))))))

Structure
         u               U             uuuuguuu     --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aauaccc  ca        g    ua      auuaugcucaauuaaggaaaauagcuaguucaacuuaccacacuacccuuuuacaaacuauccuauauguuagaugcuagca     uaau    u uu   auuc          ---uu   u   u ug 
aguugucuc caugucUAGACCAUU GUGAGAAGGGAgu        gcacc                                                                                                                                                                                                                                                                                                                           ac  aucucuaa uuug  agaagu                                                                                  uggcg    uuug g  cuc    ugcagcaggg     agu ucu g  u
||||||||| ||||||||||||||| |||||||||||||        |||||                                                                                                                                                                                                                                                                                                                           ||  |||||||| ||||  ||||||                                                                                  |||||    |||| |  |||    ||||||||||     ||| ||| |  a
ucaguggag guguAGAUCUGGUAG UACUCUUCCcuua        ugugg                                                                                                                                                                                                                                                                                                                           ug  uagagauu aaac  uuuuca                                                                                  accgu    gaac c  ggg    gcgucguucu     uua aga c  c
         c               C             uauugguu     aggggugagggguaaaaauaaauaauccuuuggaucacauucuauguuuaagaaccgaugguacugguuccacauuuacuaaaauauacuaaagcucuuagccgaaccugaucaauauuauguuuauuuuuucaauagacacguuguagaccuuuucaguacuuacuugaauuagcugaaugaagauauggauugaagacuuccuagucuaaaguaccccauugauuuugucauuuugguucugcgcucgugucgaaauuaucgacacucgauguauguccaucuggaaggaauaaccuacccccaaucaccccu  uc        a    --      -------------------------------------------------------------------------------aaa     ---c    c uu   --au          cuuau   u   u uc 


Annotation confidence High
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Genome context
GL348719.1: 7604265-7604918 [-]

Database links

Mature aly-miR824-5p

Accession MIMAT0017603
Description Arabidopsis lyrata aly-miR824-5p mature miRNA
Sequence 17 - UAGACCAUUUGUGAGAAGGGA - 37
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR824-3p

Accession MIMAT0017604
Description Arabidopsis lyrata aly-miR824-3p mature miRNA
Sequence 620 - CCUUCUCAUCGAUGGUCUAGA - 640
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103