miRBase entry: aly-MIR828

Stem-loop aly-MIR828


Accession
MI0014606
Description
Arabidopsis lyrata aly-MIR828 precursor miRNA
Gene family
MIPF0000544; MIR828


Sequence

2 reads, 70 reads per million, 1 experiments
cauggacaaagucacaaaagugauaaaaucuccuuccacuuucuaauguuUCUUGCUUAAAUGAGUAUUCCAuguaaaaaaugagucacucacucauauggguggguuggguugguuuucucuucaugAGAUGCUCAUUUGAGCAAGCAAugucugugaguggaacuauuuaguaucauguuaugaauuuugucuuuug
...(((((((((((.....((((((........((((((((.(..(((((.((((((((((((((((((.((((...(((((.((((((((((((....))))))))..)))).))))).....)))).)))))))))))))))))).)))))..).))))))))........))))))....)).)))))))))....

Structure
-cau         -  caaaa      aaaucucc        u ua     U                  C    --uaa     g    --        a 
    ggacaaagu ca     gugaua        uuccacuu c  auguu CUUGCUUAAAUGAGUAUU CAug     aaaau aguc  acucacuc u
    ||||||||| ||     ||||||        |||||||| |  ||||| |||||||||||||||||| ||||     ||||| ||||  ||||||||  
    ucuguuuua gu     uacuau        aaggugag g  uguAA GAACGAGUUUACUCGUAG guac     uuuug uugg  uggguggg a
guuu         a  -auug      gauuuauc        u uc     C                  A    uucuc     g    gu        u 


Annotation confidence Not enough data
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Genome context
GL348719.1: 6065263-6065461 [-]

Database links

Mature aly-miR828-5p

Accession MIMAT0017609
Description Arabidopsis lyrata aly-miR828-5p mature miRNA
Sequence 51 - UCUUGCUUAAAUGAGUAUUCCA - 72
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR828-3p

Accession MIMAT0017610
Description Arabidopsis lyrata aly-miR828-3p mature miRNA
Sequence 129 - AGAUGCUCAUUUGAGCAAGCAA - 150
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103