Stem-loop aly-MIR833

Accession

MI0014609

Description

Arabidopsis lyrata aly-MIR833 precursor miRNA

Gene family

MIPF0001186; MIR833

Sequence

ucuagaggguggugcaacaucucuggauguaaaugguacucuuacaaauggugauggugaaaagaaaaggagcagcuUGUUAGUCUGAACUCGGUCUAGUucaaaccaaaacaucuuuucauccuugaaauucucugcaauuacaagguugaacuuuuuuucaaccaagggcucacaccgcacuaggacucauacuauuaccuuacucuugugacaaaaauugcauuaaagagauacguuucggguuggaggaaguuugggguacggguccuaaugucaugugaagaaaaguucagcccaauaauugcagagaaacauauguuugguuugaacUAGACCGAUGUCAACAAACAAGcugcuucguuucuauucaccaucaacaucuuuaauugcaccaucgacguccagaaaugcugcaccaccccucuaga
((((((((((((((((.(((.(((((((((..(((((.(..(((...(((.((((((((((.(((((.(((((((((((((.((.(((..((((((((((((((((((((.(((..(((((....)))))(((((((((((((...(((((((((((((((((..(((((((((..(((.((......(((..(((...((....((((((((.(((...))))))..)))))....))....)))..)))......)).)))..)))))))..)).....)))))))))))))))))...)))))))))))))....)))))))))))))))))))))))..))))).))))))))))))).))))).)))))))))).)))...)))..).)))))..))))))))).))).))))))).)))))))))

Structure

         -       a   c         aa     a uc   caa   g          a     a             A  C   AC                    a   cuuuucauccuugaaa             caa                 ---ac  --       ac   g  cuagga   au   -auu  cuua     --   a   a 
ucuagaggg uggugca cau ucuggaugu  auggu c  uua   aug ugauggugaa agaaa ggagcagcuUGUU GU UGA  UCGGUCUAGUucaaaccaaa cau                uucucugcaauua   gguugaacuuuuuuuca     ca  agggcuc  acc ca      cuc  acu    ac    cucuu  gug caa  
||||||||| ||||||| ||| |||||||||  ||||| |  |||   ||| |||||||||| ||||| ||||||||||||| || |||  |||||||||||||||||||| |||                |||||||||||||   |||||||||||||||||     ||  |||||||  ||| ||      |||  |||    ||    |||||  ||| ||| a
agaucuccc accacgu gua agaccugca  uacca g  aau   uac acuaccacuu ucuuu cuucgucGAACAA CA ACU  AGCCAGAUcaaguuugguuu gua                aagagacguuaau   ccgacuugaaaagaagu     gu  uccuggg  ugg gu      gag  ugg    ug    gagaa  uac guu  
         c       c   a         gc     c uu   uuc   a          a     g             A  -   GU                    -   ------------uaca             aac                 guacu  aa       ca   g  uugaag   gu   gcuu  caua     au   -   a 

Annotation confidence Not enough data

Genome context

GL348714.1: 18210551-18210981 [+]

Mature aly-miR833-5p

• Accession: MIMAT0017615
• Description: Arabidopsis lyrata aly-miR833-5p mature miRNA
• Sequence: 78 - UGUUAGUCUGAACUCGGUCUAGU - 100
• Evidence: experimental ; Illumina [1]

Mature aly-miR833-3p

• Accession: MIMAT0017616
• Description: Arabidopsis lyrata aly-miR833-3p mature miRNA
• Sequence: 334 - UAGACCGAUGUCAACAAACAAG - 355
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089