miRBase entry: aly-MIR846

Stem-loop aly-MIR846


Accession
MI0014619
Description
Arabidopsis lyrata aly-MIR846 precursor miRNA
Gene family
MIPF0001189; MIR846


Sequence

50 reads, 1743 reads per million, 1 experiments
uuuauuugaauuuuauguggauauuggcaguuugagauuaaccaucucaauaacaaacaucuugaauguguugagguugaucacgaugaugccacguccgguuucaUUCAGGGACUUCAAUUCAGAAccaacuucaugguuuuugaacuaauuggauaugauaaaugguaccaaguuuucacuugcauucaagggacauauaucauuggguuuuuacuuuuauggauauaugacuaugacauacacgauuagaagcuaaagguugcgggaggcaagcagugggauaaugaucugcaaguggaacuucuuacuuuuaucauaucccaucagcucgaaagucuugauguuaguuUUGAAUUGAAGUGCUUGAAUUagaccagaugaauagucaguagucacaacccucuacauauaugagaucuucaggcguugagaagauuaaucucaaaacuguaacagaaaaguuggugga
......(.((((((.(.((.......(((((((((((((((.(.(((((((..(....((((((.((((((.(((((((...((..((((....((((.(((((.(((((((.(((((((((((((((.(((.(((.(((((((((.((.((.((((((((((((.((((..((((((.((((((((.(((.((..((((((((..((((........))))..)))))))).)).))).......(((((....(((..(.((((.....)))).)..))).....)))))))))))))))))))..)))))))))))))))).)).)).))))))))).))).))).))))))))))))))).))))))).))))).))))....))))...))..))).)))).)))))).)))))).....)..))))))).).)))))))).)))))))..)).))))))).)....

Structure
uuuauu g      a g  gauauug       -        c a       aa -aaac      a      u    -   auc  -ga    gcca    c     c       G               c   u   u         a  a  u            u    cc      u        ----------------------------------------------------u   a  ga        au    uuu 
      u aauuuu u ug       gcaguuu gagauuaa c ucucaau  c     aucuug augugu gagg uug   ac   ugau    cguc gguuu aUUCAGG ACUUCAAUUCAGAAc aac uca gguuuuuga cu au ggauaugauaaa ggua  aaguuu cacuugca                                                     uca gg  cauauauc  uggg   u
      | |||||| | ||       ||||||| |||||||| | |||||||  |     |||||| |||||| |||| |||   ||   ||||    |||| ||||| ||||||| ||||||||||||||| ||| ||| ||||||||| || || |||||||||||| ||||  |||||| ||||||||                                                     ||| ||  ||||||||  ||||    
      g uugaaa a ac       ugucaaa cucuaauu g agaguug  g     uagagu uauaca cucc aac   ug   acug    guag ccaga UAAGUUC UGAAGUUAAGUUuug uug agu cugaaagcu ga ua ccuauacuauuu ucau  uucaag gugaacgu                                                     agu uc  guauauag  auuu   u
--aggu g      - g  -----aa       a        a a       cg acuuc      a      u    c   -ac  aug    auaa    a     U       G               a   u   u         c  c  c            -    uc      -        cuaguaauagggugacgaacggagggcguuggaaaucgaagauuagcacauac   a  -a        gu    uca 


Annotation confidence Not enough data
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Genome context
GL348714.1: 2586985-2587456 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR846
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR846-5p

Accession MIMAT0017635
Description Arabidopsis lyrata aly-miR846-5p mature miRNA
Sequence 107 - UUCAGGGACUUCAAUUCAGAA - 127
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR846-3p

Accession MIMAT0017636
Description Arabidopsis lyrata aly-miR846-3p mature miRNA
Sequence 353 - UUGAAUUGAAGUGCUUGAAUU - 373
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103