Stem-loop aly-MIR859

Accession

MI0014625

Description

Arabidopsis lyrata aly-MIR859 precursor miRNA

Gene family

MIPF0001191; MIR859

Sequence

agucgccgauggauauagauagaugucgaaaUCUCUCCGUUGUAAAAUCAAAcaugaguaugaauuuaaccaugaagggauauuuuugauucguauacucauguuUGAUUUUACAAUAGAUAGAUAucgacgccuaucucuuguuaaacagagugauu
.((((((....((((.((((((.((((((.((((.((.((((((((((((((((((((((((((((((.((......)).)).....)))))..))))))))))))))))))))))).)).)))).)))))).))))))..)))).....).))))).

Structure

a     - -gaug    -u      a      a    C  C                       --     -----  a  au 
 gucgc c     gaua  agauag ugucga aUCU UC GUUGUAAAAUCAAAcaugaguau  gaauu     ua cc  g
 ||||| |     ||||  |||||| |||||| |||| || |||||||||||||||||||||||  |||||     || ||   
 uagug g     uugu  ucuauc gcagcu UAGA AG UAACAUUUUAGUuuguacucaua  cuuag     au gg  a
u     a acaaa    uc      c      A    U  A                       ug     uuuuu  a  ga 

Annotation confidence Not enough data

Genome context

GL348714.1: 3372640-3372797 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aly-MIR859

Mature aly-miR859-5p

• Accession: MIMAT0017647
• Description: Arabidopsis lyrata aly-miR859-5p mature miRNA
• Sequence: 32 - UCUCUCCGUUGUAAAAUCAAA - 52
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR859-3p

• Accession: MIMAT0017648
• Description: Arabidopsis lyrata aly-miR859-3p mature miRNA
• Sequence: 106 - UGAUUUUACAAUAGAUAGAUA - 126
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103