Stem-loop aly-MIR2111a

Accession

MI0014630

Description

Arabidopsis lyrata aly-MIR2111a precursor miRNA

Gene family

MIPF0000754; MIR2111

Sequence

guauuggugaggaucgggUAAUCUGCAUCCUGAGGUUUAaagcuuaauuuaagcagaaaauuuguauacgcauauacguauguguguugguauagcuuuuaGUCCUCGGGAUGCGGAUUACCucuuccuuacuuacaauac
(((((((((((((..((((((((((((((((((((...((((((........(((((...)))))(((((((((....)))))))))......))))))....))))))))))))))))))))..)))))))...))))))

Structure

      ---       uc                    -UUU      uaauuuaagcagaaaauuugu         u 
guauug   gugagga  gggUAAUCUGCAUCCUGAGG    Aaagcu                     auacgcaua a
||||||   |||||||  ||||||||||||||||||||    ||||||                     |||||||||  
cauaac   cauuccu  uCCAUUAGGCGUAGGGCUCC    uuucga                     uguguguau c
      auu       uc                    UGau      ---------------uauggu         g 

Annotation confidence Not enough data

Genome context

GL348715.1: 3692008-3692148 [+]

Mature aly-miR2111a-5p

• Accession: MIMAT0017657
• Description: Arabidopsis lyrata aly-miR2111a-5p mature miRNA
• Sequence: 19 - UAAUCUGCAUCCUGAGGUUUA - 39
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR2111a-3p

• Accession: MIMAT0017658
• Description: Arabidopsis lyrata aly-miR2111a-3p mature miRNA
• Sequence: 102 - GUCCUCGGGAUGCGGAUUACC - 122
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103