miRBase entry: aly-MIR2112

Stem-loop aly-MIR2112


Accession
MI0014632
Description
Arabidopsis lyrata aly-MIR2112 precursor miRNA
Gene family
MIPF0001195; MIR2112


Sequence

augaugCGCAAAUGCGGAUAUCAAUGUaaaucaggacaacaaaccaauagaggugcucagcaaaaacaacaaaaugcgaaaaggguuuaucagaaacauuauuugaaacauuggggucaugauauacCUUUAUAUCCGCAUUUGCGCAucau
(((((((((((((((((((((.((.(((.((((.(((..((((((......)))((...))..........((((.(.....).)))).(((((.......)))))....)))..))).)))).))).)).)))))))))))))))))))))

Structure
                     C  U   a    g   aa   accaauagaggugcucagcaaaaacaaca    g g 
augaugCGCAAAUGCGGAUAU AA GUa auca gac  caa                             aaau c a
||||||||||||||||||||| || ||| |||| |||  |||                             |||| | a
uacuACGCGUUUACGCCUAUA UU cau uagu cug  guu                             uuug g a
                     U  C   a    a   gg   -------acaaaguuuauuacaaagacua    g a 


Annotation confidence Not enough data
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Genome context
GL348713.1: 240436-240587 [+]

Database links

Mature aly-miR2112-5p

Accession MIMAT0017661
Description Arabidopsis lyrata aly-miR2112-5p mature miRNA
Sequence 7 - CGCAAAUGCGGAUAUCAAUGU - 27
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR2112-3p

Accession MIMAT0017662
Description Arabidopsis lyrata aly-miR2112-3p mature miRNA
Sequence 128 - CUUUAUAUCCGCAUUUGCGCA - 148
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103