miRBase entry: aly-MIR399h

Stem-loop aly-MIR399h


Accession
MI0014637
Description
Arabidopsis lyrata aly-MIR399h precursor miRNA
Gene family
MIPF0000015; MIR399


Sequence

auuacaGGGCAAGAUCUCUAUUGGCAGGaaaccauuacuugaccuuugcaucucuuuaugcauugcuuuguagugaguucuUGCCAAAGGAGAUUUGCCCGGuaau
(((((.(((((.(((((((.((((((((((..((((((..((.(..(((((......)))))..).)).))))))..)))))))))).)))))))))))).)))))

Structure
     a     A       A          ac      uu  c uu     cu 
auuac GGGCA GAUCUCU UUGGCAGGaa  cauuac  ga c  ugcau  c
||||| ||||| ||||||| ||||||||||  ||||||  || |  |||||   
uaauG CCCGU UUAGAGG AACCGUucuu  gugaug  uu g  acgua  u
     G     -       A          ga      -u  c uu     uu 


Annotation confidence Not enough data
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Genome context
GL348713.1: 12884715-12884820 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from aly-MIR399h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR399h-5p

Accession MIMAT0017671
Description Arabidopsis lyrata aly-miR399h-5p mature miRNA
Sequence 7 - GGGCAAGAUCUCUAUUGGCAGG - 28
Evidence experimental
Illumina [1]

Mature aly-miR399h-3p

Accession MIMAT0017672
Description Arabidopsis lyrata aly-miR399h-3p mature miRNA
Sequence 82 - UGCCAAAGGAGAUUUGCCCGG - 102
Evidence experimental
Illumina [1], Solid [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103