miRBase entry: aly-MIR848

Stem-loop aly-MIR848


Accession
MI0014645
Description
Arabidopsis lyrata aly-MIR848 precursor miRNA
Gene family
MIPF0001140; MIR848


Sequence

uaguuucgacuuccacagccuuuauauagcuuGGCAAUCCCAUGUCAAAuaaggcaaagaagaggaacccaagguauguuucucauuugccuucuuUGACAUGGGACUAACAGACUAA
..........................(((.(((..(.((((((((((((.((((((((...(((((((.........))))))).)))))))).)))))))))))).)..))).))).

Structure
uaguuucgacuuccacagccuuuaua   c   GC A            u        gaa       cca 
                          uag uuG  A UCCCAUGUCAAA aaggcaaa   gaggaac   a
                          ||| |||  | |||||||||||| ||||||||   |||||||   g
                          AUC GAC  U AGGGUACAGUuu uuccguuu   cucuuug   g
-------------------------A   A   AA C            c        --a       uau 


Annotation confidence Not enough data
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Genome context
GL348718.1: 5606276-5606393 [-]

Database links

Mature aly-miR848-5p

Accession MIMAT0017689
Description Arabidopsis lyrata aly-miR848-5p mature miRNA
Sequence 33 - GGCAAUCCCAUGUCAAA - 49
Evidence experimental
Illumina [1]

Mature aly-miR848-3p

Accession MIMAT0017690
Description Arabidopsis lyrata aly-miR848-3p mature miRNA
Sequence 97 - UGACAUGGGACUAACAGACUAA - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089