miRBase entry: aly-MIR853

Stem-loop aly-MIR853


Accession
MI0014647
Description
Arabidopsis lyrata aly-MIR853 precursor miRNA
Gene family
MIPF0001182; MIR853


Sequence

19 reads, 662 reads per million, 1 experiments
aggguaaagcguuccugCUGCUAUCCUUUUCCUGUUGCAgaagccauuaaauaucuuucucuucugggucucaagagcaccugcguuauuaucaaguuuuucaaguaucucuuaaagaacuuugggauuucaagaucuucuccuagauguuuuggaagaagagugccuuuaaucuaagaaaugaucuugagacccgaaguuuuuugaagagaaaccuaaaaacuugauaucaacgaaugugcucuuacacgcaacauuccuccuuaugaugcaucagcaacaacuccuuggaaaccauacccuuuagaaaagaucauugaaaauggagaauggaacuuacucaacgauauuuccuggcuucugCAACCGGAAAGGGGAGCAGCAugaaacucu
(((((......(((.(((((((.(((((((((.(((((((((((((..(((((((..(((.((((((((...((((((((...((((..((((((((((((...((.(((((((((((((((((((.((((((((((...((.(((((.....((..........))....))))).))...)))))))))))))))))))))))).))))).))..))))))))))))..))))...))))))))..........((((......((.(((....))).)).......)))).....))))...)))).))).((((...))))(((...........)))...)))))))..))))))))))))).)))))))))))))))).))))))))

Structure
     aaagcg   c       A         U             uu       ------------------------------uu   c    ---    -------------------------------------------------cuc        cug    au            caa  a     -              a          uuc  c     guuuu  aaga 
agggu      uuc ugCUGCU UCCUUUUCC GUUGCAgaagcca  aaauauc                                ucu uucu   gggu                                                    aagagcac   cguu  uaucaaguuuuu   gu ucucu uaaagaacuuuggg uuucaagauc   uc uagau     gg    a
|||||      ||| ||||||| ||||||||| |||||||||||||  |||||||                                ||| ||||   ||||                                                    ||||||||   ||||  ||||||||||||   || ||||| |||||||||||||| ||||||||||   || |||||     ||     
ucuca      aag ACGACGA GGGGAAAGG CAACgucuucggu  uuuauag                                aga aaga   ccca                                                    uucucgug   gcaa  auaguucaaaaa   ca agaga guuuuuugaagccc agaguucuag   ag aucua     cc    g
     ------   u       -         C             cc       caacucauucaagguaagagguaaaaguuacu   a    uuu    uaccaaagguuccucaacaacgacuacguaguauuccuccuuacaacgcaca        uaa    cu            -uc  a     a              -          uaa  a     -auuu  guga 


Annotation confidence Not enough data
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Genome context
GL348715.1: 10691977-10692369 [+]

Database links

Mature aly-miR853-5p

Accession MIMAT0017693
Description Arabidopsis lyrata aly-miR853-5p mature miRNA
Sequence 18 - CUGCUAUCCUUUUCCUGUUGCA - 39
Evidence experimental
Illumina [1]

Mature aly-miR853-3p

Accession MIMAT0017694
Description Arabidopsis lyrata aly-miR853-3p mature miRNA
Sequence 364 - CAACCGGAAAGGGGAGCAGCA - 384
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089