Stem-loop sequence aly-MIR853

Accession MI0014647
Description Arabidopsis lyrata miR853 stem-loop
Gene family MIPF0001182; MIR853
Stem-loop 
---------------------------------------------------------------------------aggguaaagcguuccugcugcuauccuuuuccuguugcagaagccauuaaauaucuuucucuucugggucuc        cug    au            caa  a     -              a          uuc  c     guuuu  aaga 
                                                                                                                                                   aagagcac   cguu  uaucaaguuuuu   gu ucucu uaaagaacuuuggg uuucaagauc   uc uagau     gg    a
                                                                                                                                                   ||||||||   ||||  ||||||||||||   || ||||| |||||||||||||| ||||||||||   || |||||     ||     
                                                                                                                                                   uucucgug   gcaa  auaguucaaaaa   ca agaga guuuuuugaagccc agaguucuag   ag aucua     cc    g
ucucaaaguacgacgaggggaaaggccaacgucuucgguccuuuauagcaacucauucaagguaagagguaaaaguuacuagaaaagauuucccauaccaaagguuccucaacaacgacuacguaguauuccuccuuacaacgcaca        uaa    cu            -uc  a     a              -          uaa  a     -auuu  guga
Get sequence
Deep sequencing
21 reads, 1 experiments

Mature sequence aly-miR853-5p

Accession MIMAT0017693
Previous IDs aly-miR853*
Sequence

18 -  

cugcuauccuuuuccuguugca

 - 39

Get sequence
Deep sequencing 12 reads, 1 experiments
Evidence experimental; Solexa [1]

Mature sequence aly-miR853-3p

Accession MIMAT0017694
Previous IDs aly-miR853
Sequence

364 -  

caaccggaaaggggagcagca

 - 384

Get sequence
Deep sequencing 3 reads, 1 experiments
Evidence experimental; Solexa [1]

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).