miRBase entry: aly-MIR3448

Stem-loop aly-MIR3448


Accession
MI0014664
Description
Arabidopsis lyrata aly-MIR3448 precursor miRNA


Sequence

9 reads, 314 reads per million, 1 experiments
uauugaCCAGGAAAACAUCUUCAGACAcgagcuugucagucaauucccagacuugacuugacacaaacucaugUCUGAGGAUUUUUUUUGUGGUCaaua
(((((((((.(((((.(((((((((((.(((..((((((((((.((...)).))))).)))))....))).)))))))))))..))))).)))))))))

Structure
         G     -C           c   --cu     -     u  c 
uauugaCCA GAAAA  AUCUUCAGACA gag    uguca gucaa uc  
||||||||| |||||  ||||||||||| |||    ||||| ||||| || c
auaaCUGGU UUUUU  UAGGAGUCUgu cuc    acagu caguu ag  
         G     UU           a   aaac     u     c  a 


Annotation confidence Not enough data
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Genome context
GL348719.1: 4173317-4173415 [-]

Database links

Mature aly-miR3448-5p

Accession MIMAT0017731
Description Arabidopsis lyrata aly-miR3448-5p mature miRNA
Sequence 7 - CCAGGAAAACAUCUUCAGACA - 27
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR3448-3p

Accession MIMAT0017732
Description Arabidopsis lyrata aly-miR3448-3p mature miRNA
Sequence 74 - UCUGAGGAUUUUUUUUGUGGUC - 95
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103