miRBase entry: aly-MIR3449

Stem-loop aly-MIR3449


Accession
MI0014665
Description
Arabidopsis lyrata aly-MIR3449 precursor miRNA


Sequence

2 reads, 70 reads per million, 1 experiments
cuuuuaguuuucauucugagauccaauaUCUAGAUUGCUUUCGGUCUGUcugauugucagauuaauaauauguuuggucaaaguuucaaccaaucagacAGAUAGAAAGCAAUCUGGAUAuuggaucucagaaugaaaaugaccagag
((....((((((((((((((((((((((((((((((((((((.(((((((((((((...((((((........))))))...........))))))))))))).))))))))))))))))))))))))))))))))))))....))..

Structure
--  uuua                                    G             --------uca      uaa 
  cu    guuuucauucugagauccaauaUCUAGAUUGCUUUC GUCUGUcugauug           gauuaa   u
  ||    |||||||||||||||||||||||||||||||||||| |||||||||||||           ||||||    
  ga    uaaaaguaagacucuagguuAUAGGUCUAACGAAAG UAGAcagacuaac           cugguu   a
ga  ccag                                    A             caacuuugaaa      ugu 


Annotation confidence Not enough data
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Genome context
GL348714.1: 708072-708219 [+]

Database links

Mature aly-miR3449-5p

Accession MIMAT0017733
Description Arabidopsis lyrata aly-miR3449-5p mature miRNA
Sequence 29 - UCUAGAUUGCUUUCGGUCUGU - 49
Evidence experimental
Illumina [1]

Mature aly-miR3449-3p

Accession MIMAT0017734
Description Arabidopsis lyrata aly-miR3449-3p mature miRNA
Sequence 100 - AGAUAGAAAGCAAUCUGGAUA - 120
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089