Stem-loop esi-MIR3454g

Accession

MI0014671

Description

Ectocarpus siliculosus esi-MIR3454g precursor miRNA

Gene family

MIPF0001097; MIR3454

Sequence

guggaauucUACCCAGCUCCGACGGAAUGGcgcucguggcuagguccccgccgccuuguaucacacgagcguguauguccgugcgacucaaggcggcagaacuagccacgggcaccCUUCCAUCGGAGCUCGUCAGAaugccacg
((((.(((((..(.((((((((.((((.((.((((((((((((.((...(((((((((..((.((((.((......)).)))).))..))))))))).)).)))))))))))).)).)))).)))))))).)..))))).)))).

Structure

-    a     AC C        C    U  c            g  ccc         ua  a    a  gu 
 gugg auucU  C AGCUCCGA GGAA GG gcucguggcuag uc   gccgccuug  uc cacg gc  g
 |||| |||||  | |||||||| |||| || |||||||||||| ||   |||||||||  || |||| ||   
 cacc uaAGA  G UCGAGGCU CCUU cc cgggcaccgauc ag   cggcggaac  ag gugc ug  u
g    g     CU C        A    C  a            a  --a         uc  c    c  ua 

Annotation confidence Not enough data

Genome context

sctg_168: 257004-257148 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from esi-MIR3454g

Mature esi-miR3454g-5p

• Accession: MIMAT0017745
• Description: Ectocarpus siliculosus esi-miR3454g-5p mature miRNA
• Sequence: 10 - UACCCAGCUCCGACGGAAUGG - 30
• Evidence: experimental ; Illumina [1]

Mature esi-miR3454g-3p

• Accession: MIMAT0017746
• Description: Ectocarpus siliculosus esi-miR3454g-3p mature miRNA
• Sequence: 117 - CUUCCAUCGGAGCUCGUCAGA - 137
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20520714
   The Ectocarpus genome and the independent evolution of multicellularity in brown algae
   "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
   "Nature (2010) 465:617-621