miRBase entry: esi-MIR3466

Stem-loop esi-MIR3466


Accession
MI0014673
Description
Ectocarpus siliculosus esi-MIR3466 precursor miRNA


Sequence

aucugucucUUCCGGAGGACUACCAUCACAcuagcguuuuuguaccacguguugaccaugcagggcaucaguguuggcgccguuucuguucaacacgugguaagaaaaagcuuuugUGAUGGUCGUCCUCCGAAAGGgccagga
..(((.(((((.((((((((.(((((((((..(((.(((((.(((((((((((((.((...(.(((.(((....))).))).)...)).))))))))))))).))))).)))..))))))))).)))))))).))))).)))..

Structure
au   u     C        U         cu   g     g             c  ugc g   a   g 
  cug cucUU CGGAGGAC ACCAUCACA  agc uuuuu uaccacguguuga ca   a ggc uca u
  ||| ||||| |||||||| |||||||||  ||| ||||| ||||||||||||| ||   | ||| |||  
  gac gGGAA GCCUCCUG UGGUAGUgu  ucg aaaag auggugcacaacu gu   u ccg ggu g
ag   c     A        C         uu   a     a             u  cuu g   c   u 


Annotation confidence Not enough data
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Genome context
sctg_6: 848101-848244 [+]

Database links

Mature esi-miR3466-5p

Accession MIMAT0017749
Description Ectocarpus siliculosus esi-miR3466-5p mature miRNA
Sequence 10 - UUCCGGAGGACUACCAUCACA - 30
Evidence experimental
Illumina [1]

Mature esi-miR3466-3p

Accession MIMAT0017750
Description Ectocarpus siliculosus esi-miR3466-3p mature miRNA
Sequence 117 - UGAUGGUCGUCCUCCGAAAGG - 137
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20520714
    The Ectocarpus genome and the independent evolution of multicellularity in brown algae
    "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
    "Nature (2010) 465:617-621