miRBase entry: esi-MIR3454f

Stem-loop esi-MIR3454f


Accession
MI0014675
Description
Ectocarpus siliculosus esi-MIR3454f precursor miRNA
Gene family
MIPF0001097; MIR3454


Sequence

cgcggaguucUUCCAAGCUCCGACGGGAUGGcgaucgugacuagguccgccgccuuguaucacacgagcguggguacacccgugcgacucaaggcggcggaacuagccacgagcgucCUUCCGUCGGAGCUGGGUAGAauuucacga
((.((((((((.((.(((((((((((((.((((.(((((.((((.((((((((((((..((.((((.(.(((....)))))))).))..)))))))))))).)))).))))).)))).))))))))))))).)).)))))))).)).

Structure
-  c        U  A             U    a     a    g            ua  a    a c   g 
 cg ggaguucU CC AGCUCCGACGGGA GGcg ucgug cuag uccgccgccuug  uc cacg g gug g
 || |||||||| || ||||||||||||| |||| ||||| |||| ||||||||||||  || |||| | |||  
 gc cuuuaAGA GG UCGAGGCUGCCUU cugc agcac gauc aggcggcggaac  ag gugc c cac u
a  a        U  G             C    g     c    a            uc  c    - -   a 


Annotation confidence Not enough data
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Genome context
sctg_168: 257266-257412 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from esi-MIR3454f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature esi-miR3454f-5p

Accession MIMAT0017753
Description Ectocarpus siliculosus esi-miR3454f-5p mature miRNA
Sequence 11 - UUCCAAGCUCCGACGGGAUGG - 31
Evidence experimental
Illumina [1]

Mature esi-miR3454f-3p

Accession MIMAT0017754
Description Ectocarpus siliculosus esi-miR3454f-3p mature miRNA
Sequence 118 - CUUCCGUCGGAGCUGGGUAGA - 138
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20520714
    The Ectocarpus genome and the independent evolution of multicellularity in brown algae
    "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
    "Nature (2010) 465:617-621