Stem-loop esi-MIR3455

Accession

MI0014676

Description

Ectocarpus siliculosus esi-MIR3455 precursor miRNA

Sequence

cgguucuugaccaUCAUUCUCAAGUUCCAUCGGAgguugaauuccagcaacgccgagucuuugcuggaguucaaaccucCGGUGGAAUCUGAGGAUAGUGgcgaagaacc
.(((((((..((((.(((((((.(((((((((((((((((((((((((((.(......).)))))))))))).))))))))))))))).))))))).))))..)))))))

Structure

c       ga    C       A               -            c cc 
 gguucuu  ccaU AUUCUCA GUUCCAUCGGAgguu gaauuccagcaa g  g
 |||||||  |||| ||||||| ||||||||||||||| |||||||||||| |   
 ccaagaa  gGUG UAGGAGU UAAGGUGGCcuccaa cuugaggucguu c  a
-       gc    A       C               a            u ug 

Annotation confidence Not enough data

Genome context

sctg_176: 135802-135911 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from esi-MIR3455

Mature esi-miR3455-5p

• Accession: MIMAT0017755
• Description: Ectocarpus siliculosus esi-miR3455-5p mature miRNA
• Sequence: 14 - UCAUUCUCAAGUUCCAUCGGA - 34
• Evidence: experimental ; Illumina [1]

Mature esi-miR3455-3p

• Accession: MIMAT0017756
• Description: Ectocarpus siliculosus esi-miR3455-3p mature miRNA
• Sequence: 80 - CGGUGGAAUCUGAGGAUAGUG - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20520714
   The Ectocarpus genome and the independent evolution of multicellularity in brown algae
   "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
   "Nature (2010) 465:617-621