Stem-loop esi-MIR3469

Accession

MI0014680

Description

Ectocarpus siliculosus esi-MIR3469 precursor miRNA

Sequence

aacguugugagcUACAAUCCGACCAUCCUCCGCcucugggguggauaugugaacaccgucgucauccucgacaugcguacuguuggauggcgacgguguucacauguccaccccagaggcGGAGAGUGGUCGGAUUGUAGCUCacaacgu
.(((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((..((((.......)))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))))))))))))

Structure

a                         C                                        uc    ug 
 acguugugagcUACAAUCCGACCAU CUCCGCcucugggguggauaugugaacaccgucgucaucc  gaca  c
 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||  g
 ugcaacaCUCGAUGUUAGGCUGGUG GAGGcggagaccccaccuguacacuuguggcagcgguagg  uugu  u
-                         A                                        --    ca 

Annotation confidence Not enough data

Genome context

sctg_89: 313892-314041 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from esi-MIR3469

Mature esi-miR3469-5p

• Accession: MIMAT0017763
• Description: Ectocarpus siliculosus esi-miR3469-5p mature miRNA
• Sequence: 13 - UACAAUCCGACCAUCCUCCGC - 33
• Evidence: experimental ; Illumina [1]

Mature esi-miR3469-3p

• Accession: MIMAT0017764
• Description: Ectocarpus siliculosus esi-miR3469-3p mature miRNA
• Sequence: 121 - GGAGAGUGGUCGGAUUGUAGCUC - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20520714
   The Ectocarpus genome and the independent evolution of multicellularity in brown algae
   "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
   "Nature (2010) 465:617-621