Stem-loop esi-MIR3462

Accession

MI0014687

Description

Ectocarpus siliculosus esi-MIR3462 precursor miRNA

Sequence

caaacgcgcguccUUGUCCCGGCAUCCCGAACGUcggguauguagugcagccgggcucggcgcacucgugguuuacaaagcaggagugagccgagcccggcugcaccacgcagccgacGUUCGGGAUUCUGGGACGAGGacccacguuuu
.(((((.(.(((((((((((((.((((((((((((((.(.(((.(((((((((((((((((.(((((.((.((....)).)).))))).))))))))))))))))).))).).)))))))))))))).))))))))))))).).))))).

Structure

c     c c             C              g a   a                 g     g  g  u 
 aaacg g guccUUGUCCCGG AUCCCGAACGUcgg u ugu gugcagccgggcucggc cacuc ug uu a
 ||||| | ||||||||||||| |||||||||||||| | ||| ||||||||||||||||| ||||| || ||  
 uuugc c caGGAGCAGGGUC UAGGGCUUGcagcc a gca cacgucggcccgagccg gugag ac aa c
u     a c             U              g c   c                 a     g  g  a 

Annotation confidence Not enough data

Genome context

sctg_447: 45132-45281 [+]

Mature esi-miR3462-5p

• Accession: MIMAT0017777
• Description: Ectocarpus siliculosus esi-miR3462-5p mature miRNA
• Sequence: 14 - UUGUCCCGGCAUCCCGAACGU - 34
• Evidence: experimental ; Illumina [1]

Mature esi-miR3462-3p

• Accession: MIMAT0017778
• Description: Ectocarpus siliculosus esi-miR3462-3p mature miRNA
• Sequence: 119 - GUUCGGGAUUCUGGGACGAGG - 139
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20520714
   The Ectocarpus genome and the independent evolution of multicellularity in brown algae
   "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
   "Nature (2010) 465:617-621