Stem-loop esi-MIR3454d

Accession

MI0014690

Description

Ectocarpus siliculosus esi-MIR3454d precursor miRNA

Gene family

MIPF0001097; MIR3454

Sequence

cgcggaguucUUCCAAGCUCCGACGGGAUGGcgaucgugacuagguccgccgccuuguaucacacgagcguguauguccgugcgacucaaggcggcagaacuagccacgggcaccCUUCCAUCGGAGCUCGUCAGAaugccacga
((.((.(((((..(.((((((((.((((.((.(..((((.((((.((.(((((((((..((.((((.((......)).)))).))..))))))))).)).)))).))))..).)).)))).)))))))).)..))))).)).)).

Structure

-  c  a     UC A        C    U  c au    a    g  c         ua  a    a  gu 
 cg gg guucU  C AGCUCCGA GGGA GG g  cgug cuag uc gccgccuug  uc cacg gc  g
 || || |||||  | |||||||| |||| || |  |||| |||| || |||||||||  || |||| ||   
 gc cc uaAGA  G UCGAGGCU CCUU cc c  gcac gauc ag cggcggaac  ag gugc ug  u
a  a  g     CU C        A    C  a gg    c    a  a         uc  c    c  ua 

Annotation confidence Not enough data

Genome context

sctg_168: 254431-254575 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from esi-MIR3454d

Mature esi-miR3454d-5p

• Accession: MIMAT0017783
• Description: Ectocarpus siliculosus esi-miR3454d-5p mature miRNA
• Sequence: 11 - UUCCAAGCUCCGACGGGAUGG - 31
• Evidence: experimental ; Illumina [1]

Mature esi-miR3454d-3p

• Accession: MIMAT0017784
• Description: Ectocarpus siliculosus esi-miR3454d-3p mature miRNA
• Sequence: 116 - CUUCCAUCGGAGCUCGUCAGA - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20520714
   The Ectocarpus genome and the independent evolution of multicellularity in brown algae
   "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
   "Nature (2010) 465:617-621