miRBase entry: esi-MIR3456

Stem-loop esi-MIR3456


Accession
MI0014691
Description
Ectocarpus siliculosus esi-MIR3456 precursor miRNA


Sequence

gccaccacUUGAGGAACGUCGCGGAGUCAgaccacgcgUUGGCCUGCGAGAAGUGCUUcagaggugga
.(((((..((((((.((.((((((.(((((........)))))))))))...)).)))))).))))).

Structure
g     ac      A  --G      A     acc 
 ccacc  UUGAGG AC   UCGCGG GUCAg   a
 |||||  |||||| ||   |||||| |||||    
 ggugg  gacUUC UG   AGCGUC CGGUU   c
a     -a      G  AAG      -     gcg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
sctg_18: 214550-214617 [+]

Database links

Mature esi-miR3456-5p

Accession MIMAT0017785
Description Ectocarpus siliculosus esi-miR3456-5p mature miRNA
Sequence 9 - UUGAGGAACGUCGCGGAGUCA - 29
Evidence experimental
Illumina [1]

Mature esi-miR3456-3p

Accession MIMAT0017786
Description Ectocarpus siliculosus esi-miR3456-3p mature miRNA
Sequence 39 - UUGGCCUGCGAGAAGUGCUU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20520714
    The Ectocarpus genome and the independent evolution of multicellularity in brown algae
    "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
    "Nature (2010) 465:617-621