miRBase entry: esi-MIR3468

Stem-loop esi-MIR3468


Accession
MI0014693
Description
Ectocarpus siliculosus esi-MIR3468 precursor miRNA


Sequence

caagaagcgCAGCGAAAAUGGACGAGAAGAagaaaacagcggaggcugcaacagagacauguauaugaaaauucugguuacccaugccugcguugcagccuccacugauuucuucUUCUUUUCCAGGUUGGCUGCGUuuuuuu
.((((((((((((.((..((((.((((((((((((.(((.((((((((((((..((.((((...((.(......).))....)))).))..)))))))))))).))).)))))))))))).))))..)).)))))))))))).

Structure
c            G  AA    C            a   c            ag  a    -uau  g aa 
 aagaagcgCAGC AA  UGGA GAGAAGAagaaa cag ggaggcugcaac  ag caug    au a  a
 |||||||||||| ||  |||| |||||||||||| ||| ||||||||||||  || ||||    || |   
 uuuuuUGCGUCG UU  ACCU UUCUUcuucuuu guc ccuccgacguug  uc guac    ug u  u
u            G  GG    U            a   a            cg  c    ccau  g cu 


Annotation confidence Not enough data
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Genome context
sctg_81: 510208-510350 [-]

Database links

Mature esi-miR3468-5p

Accession MIMAT0017789
Description Ectocarpus siliculosus esi-miR3468-5p mature miRNA
Sequence 10 - CAGCGAAAAUGGACGAGAAGA - 30
Evidence experimental
Illumina [1]

Mature esi-miR3468-3p

Accession MIMAT0017790
Description Ectocarpus siliculosus esi-miR3468-3p mature miRNA
Sequence 116 - UUCUUUUCCAGGUUGGCUGCGU - 137
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20520714
    The Ectocarpus genome and the independent evolution of multicellularity in brown algae
    "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
    "Nature (2010) 465:617-621