miRBase entry: esi-MIR3458

Stem-loop esi-MIR3458


Accession
MI0014695
Description
Ectocarpus siliculosus esi-MIR3458 precursor miRNA


Sequence

uuggaaGGACUUUCUGUUGGACGCAUAUugggcacugcuucaacuugcugcgcauuauagcaguacccaaugUGCGUCCAAAAGAUCGUCCUUccac
.(((((((((..(((.((((((((((((((((.((((((......(((...)))....)))))).)))))))))))))))).)))..))))))))).

Structure
u         UU   G                c      ucaacu   u 
 uggaaGGAC  UCU UUGGACGCAUAUuggg acugcu      ugc  
 |||||||||  ||| |||||||||||||||| ||||||      ||| g
 accUUCCUG  AGA AACCUGCGUguaaccc ugacga      acg  
c         CU   A                a      --uauu   c 


Annotation confidence Not enough data
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Genome context
sctg_20: 473004-473100 [-]

Database links

Mature esi-miR3458-5p

Accession MIMAT0017793
Description Ectocarpus siliculosus esi-miR3458-5p mature miRNA
Sequence 7 - GGACUUUCUGUUGGACGCAUAU - 28
Evidence experimental
Illumina [1]

Mature esi-miR3458-3p

Accession MIMAT0017794
Description Ectocarpus siliculosus esi-miR3458-3p mature miRNA
Sequence 73 - UGCGUCCAAAAGAUCGUCCUU - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20520714
    The Ectocarpus genome and the independent evolution of multicellularity in brown algae
    "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
    "Nature (2010) 465:617-621